#!/bin/bash

TMPDIR=$(mktemp --directory)

cp /usr/share/ncbi/igblast/internal_data/mouse/mouse_V.* ${TMPDIR}
cp c++/src/objtools/blast/seqdb_writer/unit_test/data/WP_009685663.fasta ${TMPDIR}

(
    cd ${TMPDIR}
    ln -s /usr/share/ncbi/igblast/internal_data
    igblastp -germline_db_V mouse_V -query WP_009685663.fasta
)

rm -rf ${TMPDIR}
