face17b07403993bb5262e4c0abcac91 *DESCRIPTION
b3aae8f9460de55724922d061358c17f *NAMESPACE
7ac626a53c39d33dd5637a370590881a *NEWS
4c56ba00431af8bdeb538ba6a8858202 *R/AdvancedBSgenomeForge.R
038d7819a23c987b6da9900b38362481 *R/BSgenome-class.R
fd5c94bc32746983a2c42a030ba7a845 *R/BSgenome-utils.R
ad990282abc5c4458b68c6fb6806642f *R/BSgenomeViews-class.R
97bfa4588649e6b4b6061ad994678a8f *R/InjectSNPsHandler-class.R
82d99b189be4a83a3601d7520d4562d3 *R/ODLT_SNPlocs-class.R
af49230c2421119da397b07f38990a86 *R/OldFashionSNPlocs-class.R
4b6d5844ffa1bc5aa573ca4e5da9538d *R/OnDiskLongTable-class.R
0e1473cab7cdc1e8a408ece8fdd9e71a *R/OnDiskLongTable_old-class.R
ca4d6162c5f2a5a7ea34ab824626d9f4 *R/OnDiskNamedSequences-class.R
142100b4d10e8650bbc5aa0433694b18 *R/SNPlocs-class.R
3044bb6069b3202cb75c505045f74615 *R/XtraSNPlocs-class.R
6cae211fd6503be8ed93c8a73f2bcd58 *R/available.genomes.R
cace826f7ad3a6b93a10ab4bbd79c53f *R/bsapply.R
a8a91169f91607519d27737dcd2c17b6 *R/export-methods.R
7d329d45e94e8583c8bdd393890240a5 *R/extractAt-methods.R
60e428a9e140045ecfacba909afb191f *R/getSeq-methods.R
907e6086733b0ff372839917bf57650c *R/injectSNPs.R
c0c7877bf26ce74dbeff62711526001a *R/utils.R
18d19a057e90b704272604fc3ab3214b *README.md
7aadc1d90eb71ace67295c33e234106b *TODO
390eee8699f1c8d1ff2cde67437d406a *build/vignette.rds
113fa6f769105ba2bfe3457240ce2000 *inst/doc/BSgenomeForge.Rnw
a434a1796ad642072ea75f7a90c82335 *inst/doc/BSgenomeForge.pdf
93d70d39fd1c056b547b12b0d04640fa *inst/doc/GenomeSearching.R
7451fd7026a3945f7bb518d58d0c0c42 *inst/doc/GenomeSearching.Rnw
9420a994c7fd5ad48888fb48b3ceb473 *inst/doc/GenomeSearching.pdf
ad10397100fa908a78f988cc559e3da6 *inst/extdata/ce2chrM.fa.gz
8594d6cfadd8cf5d7630f729edb7ce1f *inst/extdata/ce2chrX.fa.gz
7b7a79eb9eb19d3b5cc28557ed29a861 *inst/extdata/ce2dict0.fa
85e6d40af910b7ae01152eaf0e5fa8e4 *man/AdvancedBSgenomeForge.Rd
2956d6920a88e5d60c57ef4d5717f617 *man/BSParams-class.Rd
443658da51606ea12fc3fb287d85e8f1 *man/BSgenome-class.Rd
dc9d7c292d19b6b688de1f37d088cfa1 *man/BSgenome-utils.Rd
422ff2de4ed7cf4312e9b27a1b9d6bcc *man/BSgenomeViews-class.Rd
bf6db53d5e6a4cbd421bf82af2ba77c6 *man/SNPlocs-class.Rd
d571d12696cdf76eac35570088b6660f *man/XtraSNPlocs-class.Rd
00d3f564e5140f34a78478321d1ef070 *man/available.genomes.Rd
ed513d84d75efdd2d0bb996d441b7160 *man/bsapply.Rd
0f4a1856ac28670c665bf4cdd29bea46 *man/export-methods.Rd
c318b8ec11642623f4776d2851206d0f *man/getSeq-methods.Rd
9f71274bf7d05f12b09daeb596f2b1bf *man/injectSNPs.Rd
113fa6f769105ba2bfe3457240ce2000 *vignettes/BSgenomeForge.Rnw
7451fd7026a3945f7bb518d58d0c0c42 *vignettes/GenomeSearching.Rnw
