#!/bin/bash

# Public domain notice for all NCBI EDirect scripts is located at:
# https://www.ncbi.nlm.nih.gov/books/NBK179288/#chapter6.Public_Domain_Notice

# efetch -db biosample -id SAMN38051082 -format docsum | bsmp2info

xtract -rec BioSampleInfo -pattern DocumentSummary \
  -wrp Accession -element Accession \
  -wrp Title -element DocumentSummary/Title \
  -wrp Link -sep "|" -numeric Links/Link \
  -group Attribute -if @harmonized_name \
    -TAG -lower @harmonized_name -wrp "&TAG" -element Attribute |
transmute -format
