#!/bin/sh -e

pkg=mothur

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $AUTOPKGTEST_TMP

cp -a /usr/share/doc/${pkg}/HA.fasta* .
cp -a /usr/share/doc/${pkg}/test.batch* .
gunzip -r *

mothur test.batch
# see https://forum.mothur.org/t/changes-in-version-1-47-0/21251/5 for updated batch file
