# parallel_msf 20220414.dev
# merged rejected_clusters.txt
# Rejected candidates found:
Cluster:
- model = Archaeal-T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_01967, Archaeal-T4P_arCOG00589, 1882), (VICH001.B.00001.C001_01973, Archaeal-T4P_arCOG00589, 1888)
This candidate has been rejected because:
	- The quorum of mandatory genes required (3) is not reached: 0
	- The quorum of genes required (3) is not reached: 1
============================================================
- model = ComM
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00857, ComM_comEB, 788)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 0
	- The quorum of genes required (4) is not reached: 1
============================================================
- model = ComM
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00857, ComM_comEB, 788)
- model = ComM
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_01796, ComM_comEC, 1714)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (4) is not reached: 2
============================================================
- model = ComM
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_01796, ComM_comEC, 1714)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (4) is not reached: 1
============================================================
- model = MSH
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00512, MSH_mshA, 463)
This candidate has been rejected because:
	- The quorum of mandatory genes required (3) is not reached: 1
	- The quorum of genes required (4) is not reached: 1
============================================================
- model = T2SS
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_02308, T4P_pilD, 2205)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (6) is not reached: 1
============================================================
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00476, T4P_pilT, 427), (VICH001.B.00001.C001_00477, T4P_pilU, 428)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (5) is not reached: 2
============================================================
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00476, T4P_pilT, 427), (VICH001.B.00001.C001_00477, T4P_pilU, 428)
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00847, T4P_pilO, 778), (VICH001.B.00001.C001_00850, T4P_pilE, 781), (VICH001.B.00001.C001_00851, T4P_fimT, 782), (VICH001.B.00001.C001_00852, T4P_pilW, 783), (VICH001.B.00001.C001_00853, T4P_pilX, 784), (VICH001.B.00001.C001_00854, T4P_pilV, 785)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_00847, T4P_pilO, 778), (VICH001.B.00001.C001_00850, T4P_pilE, 781), (VICH001.B.00001.C001_00851, T4P_fimT, 782), (VICH001.B.00001.C001_00852, T4P_pilW, 783), (VICH001.B.00001.C001_00853, T4P_pilX, 784), (VICH001.B.00001.C001_00854, T4P_pilV, 785)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 2
============================================================
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_02305, T4P_pilA, 2202), (VICH001.B.00001.C001_02306, T4P_pilB, 2203), (VICH001.B.00001.C001_02307, T4P_pilC, 2204), (VICH001.B.00001.C001_02308, T4P_pilD, 2205)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
	- The quorum of genes required (5) is not reached: 4
============================================================
- model = T4P
- replicon = VICH001.B.00001.C001
- hits = (VICH001.B.00001.C001_02502, MSH_mshM, 2391), (VICH001.B.00001.C001_02505, T4P_pilQ, 2394), (VICH001.B.00001.C001_02506, T4P_pilP, 2395), (VICH001.B.00001.C001_02507, T4P_pilO, 2396), (VICH001.B.00001.C001_02508, T4P_pilN, 2397), (VICH001.B.00001.C001_02509, T4P_pilM, 2398)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================

- model = ComM
- replicon = GCF_000006845
- hits = (GCF_000006845_002590, ComM_comEC, 259)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (4) is not reached: 1
============================================================
- model = ComM
- replicon = GCF_000006845
- hits = (GCF_000006845_002590, ComM_comEC, 259)
- model = ComM
- replicon = GCF_000006845
- hits = (GCF_000006845_008360, ComM_comEB, 836)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (4) is not reached: 2
============================================================
- model = ComM
- replicon = GCF_000006845
- hits = (GCF_000006845_008360, ComM_comEB, 836)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 0
	- The quorum of genes required (4) is not reached: 1
============================================================
- model = T2SS
- replicon = GCF_000006845
- hits = (GCF_000006845_014280, T4P_pilD, 1428)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (6) is not reached: 1
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_001030, T4P_pilQ, 103), (GCF_000006845_001040, T4P_pilP, 104), (GCF_000006845_001050, T4P_pilO, 105), (GCF_000006845_001060, T4P_pilN, 106), (GCF_000006845_001070, T4P_pilM, 107)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_001030, T4P_pilQ, 103), (GCF_000006845_001040, T4P_pilP, 104), (GCF_000006845_001050, T4P_pilO, 105), (GCF_000006845_001060, T4P_pilN, 106), (GCF_000006845_001070, T4P_pilM, 107)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_004190, T4P_fimT, 419), (GCF_000006845_004200, T4P_pilV, 420), (GCF_000006845_004210, T4P_pilW, 421), (GCF_000006845_004220, T4P_pilX, 422), (GCF_000006845_004230, T4P_pilA, 423)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_001030, T4P_pilQ, 103), (GCF_000006845_001040, T4P_pilP, 104), (GCF_000006845_001050, T4P_pilO, 105), (GCF_000006845_001060, T4P_pilN, 106), (GCF_000006845_001070, T4P_pilM, 107)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_012440, T4P_pilA, 1244)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_004190, T4P_fimT, 419), (GCF_000006845_004200, T4P_pilV, 420), (GCF_000006845_004210, T4P_pilW, 421), (GCF_000006845_004220, T4P_pilX, 422), (GCF_000006845_004230, T4P_pilA, 423)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 0
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_004190, T4P_fimT, 419), (GCF_000006845_004200, T4P_pilV, 420), (GCF_000006845_004210, T4P_pilW, 421), (GCF_000006845_004220, T4P_pilX, 422), (GCF_000006845_004230, T4P_pilA, 423)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_014270, T4P_pilC, 1427), (GCF_000006845_014280, T4P_pilD, 1428), (GCF_000006845_014310, T4P_pilB, 1431)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_004190, T4P_fimT, 419), (GCF_000006845_004200, T4P_pilV, 420), (GCF_000006845_004210, T4P_pilW, 421), (GCF_000006845_004220, T4P_pilX, 422), (GCF_000006845_004230, T4P_pilA, 423)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_016430, T4P_pilT, 1643), (GCF_000006845_016440, T4P_pilU, 1644)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_012440, T4P_pilA, 1244)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 0
	- The quorum of genes required (5) is not reached: 1
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_014270, T4P_pilC, 1427), (GCF_000006845_014280, T4P_pilD, 1428), (GCF_000006845_014310, T4P_pilB, 1431)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_012440, T4P_pilA, 1244)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
	- The quorum of genes required (5) is not reached: 4
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_016430, T4P_pilT, 1643), (GCF_000006845_016440, T4P_pilU, 1644)
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_012440, T4P_pilA, 1244)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (5) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_014270, T4P_pilC, 1427), (GCF_000006845_014280, T4P_pilD, 1428), (GCF_000006845_014310, T4P_pilB, 1431)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 3
	- The quorum of genes required (5) is not reached: 3
============================================================
- model = T4P
- replicon = GCF_000006845
- hits = (GCF_000006845_016430, T4P_pilT, 1643), (GCF_000006845_016440, T4P_pilU, 1644)
This candidate has been rejected because:
	- The quorum of mandatory genes required (4) is not reached: 1
	- The quorum of genes required (5) is not reached: 2
============================================================

