gubbins (3.3.3-1) unstable; urgency=medium

  * New upstream version
  * iqtree2.patch: unfuzz.
  * autoupdate_configure.ac.patch: forwarding not needed.

 -- Étienne Mollier <emollier@debian.org>  Sun, 04 Feb 2024 17:45:59 +0100

gubbins (3.3.1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)

  [ Étienne Mollier ]
  * autoupdate_configure.ac.patch: refresh.
  * d/t/run-example: define HOME directory.
    This fixes numba caching issues with the newer test items.
  * d/control: suggest r-core-base.
    This is because gubbins ships a couple of R scripts, although they are
    not critical to proper gubbins operation.
  * gubbins_3.1.0_exe_in_usr_lib.patch: delete leftover.

 -- Étienne Mollier <emollier@debian.org>  Sat, 16 Dec 2023 15:22:50 +0100

gubbins (3.3.0-3) unstable; urgency=medium

  * gubbins_drawer was removed upstream so do not link to it any more
    Closes: #986238
  * Enable building twice in a row
    Closes: #1044465
  * Set upstream metadata fields: Repository.
  * Fix lintian-overrides

 -- Andreas Tille <tille@debian.org>  Thu, 17 Aug 2023 09:25:33 +0200

gubbins (3.3.0-2) unstable; urgency=medium

  * Test-Depends: iqtree

 -- Andreas Tille <tille@debian.org>  Thu, 13 Jul 2023 09:44:07 +0200

gubbins (3.3.0-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse.
  * Build-Depends: autoconf-archive
  * autoupdate to avoid warnings from configure.ac
  * Build-Depends: tox and do not override dh_auto_test
  * Test-Depends / Recommends: python3-numba

 -- Andreas Tille <tille@debian.org>  Wed, 12 Jul 2023 21:30:57 +0200

gubbins (2.4.1-5) unstable; urgency=medium

  * Team Upload.
  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * Build-Depends: python3-scipy <!nocheck>, python3-multiprocess <!nocheck>,
    python3-wheel <!nocheck>
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Adapt test to iqtree2
    Closes: #1005476

  [ Étienne Mollier ]
  * d/control: update uploader address
  * d/watch: bump to uscan version 4 and fix broken link to github

  [ Nilesh Patra ]
  * Switch from nosetest -> pytest

 -- Andreas Tille <tille@debian.org>  Sun, 13 Feb 2022 15:17:59 +0100

gubbins (2.4.1-4) unstable; urgency=medium

  * Team upload.
  * Fix symlink to right place (Closes: #986238)

 -- Nilesh Patra <nilesh@debian.org>  Sun, 04 Apr 2021 16:11:03 +0530

gubbins (2.4.1-3) unstable; urgency=medium

  [ Andreas Tille ]
  * Remove non-working e-mail addresses
  * Remove Aidan Delaney from Uploaders since his e-mail is bouncing

  [ Étienne Mollier ]
  * Added src/ to PATH for build time tests.  (Closes: #971111)
  * Fixed spelling error in gubbins binaries.
  * Added myself to Uploaders.
  * debhelper-compat 13 (routine-update)

 -- Étienne Mollier <etienne.mollier@mailoo.org>  Mon, 02 Nov 2020 13:22:13 +0100

gubbins (2.4.1-2) unstable; urgency=medium

  * Versioned Build-Depends: raxml (>= 8.2.12+dfsg-5)
    Closes: #955006
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 02 Apr 2020 17:03:51 +0200

gubbins (2.4.1-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.0
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository.
  * Specified raxml version from Dockerfile - test complained on i386

 -- Steffen Moeller <moeller@debian.org>  Wed, 22 Jan 2020 12:30:58 +0100

gubbins (2.4.0-2) unstable; urgency=medium

  * Team upload.
  * Fix run_gubbins wrapper (Sascha Steinbiss)
  * raxml needed as default method at runtime - turned back into
    hard dependency (suggested by Sascha)

 -- Steffen Moeller <moeller@debian.org>  Thu, 09 Jan 2020 02:31:16 +0100

gubbins (2.4.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream version

  * Removing debian/patches/disable_test.patch which apparently upstream
    addressed in its new release.
  * Added build-time (testing) and recommended runtime dependency on iqtree
  * Demoted runtime-dependencies to fasttree and raxml to recommended

 -- Steffen Moeller <moeller@debian.org>  Wed, 08 Jan 2020 12:59:28 +0100

gubbins (2.3.5-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Secure URI in copyright format
  * Set upstream metadata fields: Repository, Repository-Browse.
  * Cleaner clean
  * Reported autogenerated files in source tree to upstream

 -- Steffen Moeller <moeller@debian.org>  Sat, 21 Dec 2019 00:00:10 +0100

gubbins (2.3.4-1) unstable; urgency=medium

  * New upstream version
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * debian/rules:
     - Respect DEB_BUILD_OPTIONS in override_dh_auto_test
     - Do not parse d/changelog
  * Remove unneeded Testsuite: autopkgtest

 -- Andreas Tille <tille@debian.org>  Wed, 26 Sep 2018 16:48:49 +0200

gubbins (2.3.1-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Bump Standards-Version.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 01 Oct 2017 11:59:00 +0100

gubbins (2.2.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.

 -- Sascha Steinbiss <satta@debian.org>  Thu, 03 Nov 2016 15:25:15 +0100

gubbins (2.1.0-2) unstable; urgency=medium

  * Team upload.
  * Disable tests to address FTBFS caused by failed build time tests
    relying on external dependencies.
    Closes: #839320

 -- Sascha Steinbiss <satta@debian.org>  Wed, 26 Oct 2016 14:26:18 +0200

gubbins (2.1.0-1) unstable; urgency=medium

  * New upstream release

 -- Andreas Tille <tille@debian.org>  Fri, 09 Sep 2016 10:02:51 +0200

gubbins (2.0.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Fix Vcs-Git.
  * Remove dependencies on FastML.
  * Update manpage dates.
  * Bump Standards-Version.
  * Add autopkgtests.

 -- Sascha Steinbiss <satta@debian.org>  Wed, 20 Jul 2016 13:08:22 +0000

gubbins (1.4.9-1) unstable; urgency=medium

  * New upstream version
  * Build-Depends: fastml

 -- Andreas Tille <tille@debian.org>  Wed, 20 Apr 2016 19:55:22 +0200

gubbins (1.4.7-1) unstable; urgency=medium

  * New upstream version
  * cme fix dpkg-control
  * enhance hardening

 -- Andreas Tille <tille@debian.org>  Sat, 19 Mar 2016 22:10:44 +0100

gubbins (1.4.5-1) unstable; urgency=medium

  * New upstream version
  * Secure Vcs-Git

 -- Andreas Tille <tille@debian.org>  Wed, 27 Jan 2016 19:53:33 +0100

gubbins (1.4.4-2) unstable; urgency=medium

  * do not build-dep on python3-all-dev
    Closes: #809489

 -- Andreas Tille <tille@debian.org>  Thu, 31 Dec 2015 12:49:12 +0100

gubbins (1.4.4-1) unstable; urgency=medium

  * New upstream version
    Closes: #807150

 -- Andreas Tille <tille@debian.org>  Wed, 09 Dec 2015 17:07:44 +0100

gubbins (1.4.3-1) unstable; urgency=medium

  * Initial Debian release (Closes: #764232, #806726)

 -- Andreas Tille <tille@debian.org>  Mon, 30 Nov 2015 15:10:52 +0100
