NAME
    geneparse - sequence file loader frontend

SYNAPSE
    geneparse [options...] [input] [input2 ...] #read input and write to
    stdout

DESCRIPTION
    Reads a sequence file and writes it somewhere (by default to stdout).

    A specific range within an input file can be specified by
    file[start,stop]. The square brackets can be interchanged for any of
    {[()]}, (eg. "genome.fa[3000,4000]" or "genome.fa{3000~4000}"). Be aware
    that all of those might be parsed by your shell. Also any non-word
    character can be used to separate the numbers.

OPTIONS
    --repeatmask|-r
        use soft-repeatmasked sequences (ie: replace lowercase bases with
        N's).

    --upper|--unmask|-U
         uppercase all bases.

    --length|-l
        just print the length and exit

    --clean|-c
        don't append a new line when finished

    --version|-V
        prints the program version

    --help|-h
        prints a help message

    --output|-o
        send output to a file (otherwise use stdout). --output implies
        --clean.

    --quiet|-q
        silence all warnings

    --verbose|-v
        prints lots of extra details

LICENSE
    GNU General Public License, version 3 (GPLv3)

AVAILABILITY
    <http://murasaki.sourceforge.net>

AUTHOR
    Kris Popendorf <krisp@dna.bio.keio.ac.jp>

SEE ALSO
    murasaki(1), geneparse(1)

