Difference between sass-n and malt:


Weird gap spacing:

In the following alignment C-T-C seems weird, but this is correct, as this scores better than C--T:

 Score = 25.6 bits (27), Expected = 1e-05
 Identities = 22/25 (88%), Gaps = 2/25 (8%)
 Strand = Plus / Plus

Query: 1        CCCACAACCC-T-CCACAAGGGGGG 23
                |||||||||| | |||||| |||||
Sbjct: 1        CCCACAACCCATCCCACAATGGGGG 25



Be very careful with classes that have static components that are initialized upon use. These can
cause problems when used in a multi-threaded context




